Insertion junction: CLIP2.078445_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.078445
Chromosome:chromosome 3
Location:2204460
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g157250 (1 of 66) 2.7.12.1 - Dual-specificity kinase 5'UTR
Cre03.g157300 CAF1 (1 of 1) K12581 - CCR4-NOT transcription complex subunit 7/8 (CNOT7_8, CAF1, POP2); CCR4-associated factor 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCTGAAGCAAAATCGACTGAGATGCCGGCACTGTCGTGACACCAAAACCA
Internal bar code:GCTACATGGTGTTTTCTGAAAT

Confirmation - LEAP-Seq

LEAP-Seq distance:1754
LEAP-Seq percent confirming:33.3333
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:8
LEAP-Seq n unique pos:12

Suggested primers for confirmation by PCR

Suggested primer 1:GTGAGGGAGCGATCAGGATG
Suggested primer 2:TTTTCCCCCTCCTCGCATTC