Insertion junction: CLIP2.078464_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.078464
Chromosome:chromosome 13
Location:1876587
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g575500 (1 of 726) IPR011009 - Protein kinase-like domain 5'UTR
Cre13.g801524 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCGCTATATTAATTTGGCAAGTATTGTAGGCATCCACTTACTAGGCGTTC
Internal bar code:GTTGCGTTACTTCAGCCCCCGT

Confirmation - LEAP-Seq

LEAP-Seq distance:2155
LEAP-Seq percent confirming:93.75
LEAP-Seq n confirming:15
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:GGGGTTCTCCATCATGGCAA
Suggested primer 2:TGCGGTGAGTTGTTTGCATG