Insertion junction: CLIP2.078480_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.078480
Chromosome:plastome
Location:139122
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802321 psbA,2716987,ChreCp057 (1 of 2) K02703 - photosystem II P680 reaction center D1 protein (psbA); photosystem II protein D1 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATTTATCTTCTTCGGGGTATATAAAGATCCCTAAGTTTACTTGCCTAGGC
Internal bar code:ATTAGATAAACAATTCAAATAA

Confirmation - LEAP-Seq

LEAP-Seq distance:391
LEAP-Seq percent confirming:16.2791
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:36
LEAP-Seq n unique pos:43

Suggested primers for confirmation by PCR

Suggested primer 1:AAAAGAAGCCCCACCACCAA
Suggested primer 2:CTGACTGCCGAACAAGTTGC