Insertion junction: CLIP2.078533_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.078533
Chromosome:chromosome 7
Location:3378249
Confidence (%):40
Locus systematic id Locus common name Defline Feature
Cre07.g335100 (1 of 5) IPR011051//IPR013096 - RmlC-like cupin domain // Cupin 2, conserved barrel intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGGGTTGCATGAGCTGTGCTCGTCTACCAAGCACCATCAGGCAGGGGCGC
Internal bar code:GCGAACGGATAACATGGAGTTT

Confirmation - LEAP-Seq

LEAP-Seq distance:578
LEAP-Seq percent confirming:13.6364
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:19
LEAP-Seq n unique pos:22

Suggested primers for confirmation by PCR

Suggested primer 1:CTGATGTTTTGCGGCCACAA
Suggested primer 2:GTTGAAGCTCTCAGGCCAGT