Insertion junction: CLIP2.078635_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.078635
Chromosome:plastome
Location:170809
Confidence (%):40
Locus systematic id Locus common name Defline Feature
CreCp.g802327 2716959,atpI,ChreCp062 ATPase IV subunit; (1 of 1) K02108 - F-type H+-transporting ATPase subunit a (ATPF0A, atpB) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTGAAGCTTTAGCAGATCACCACTAATCTTTTTTTCTAGCTAAAAGAAGT
Internal bar code:CTTGGATTTCCTGAGTGTTTAA

Confirmation - LEAP-Seq

LEAP-Seq distance:288
LEAP-Seq percent confirming:90.6977
LEAP-Seq n confirming:39
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:43

Suggested primers for confirmation by PCR

Suggested primer 1:CACGACGTTGTGGACAAGAT
Suggested primer 2:ACGGTGAATTAGCAGCTCCA