Insertion junction: CLIP2.078643_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.078643
Chromosome:plastome
Location:122937
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802313 rbcL,ChreCp049,2717040 (1 of 1) K01601 - ribulose-bisphosphate carboxylase large chain (rbcL); RuBisCO large subunit CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CATGTACCTGTTGAAGATTCAGCAGCTACAGCAGCACCACATTCTTCAGG
Internal bar code:ACGTAGCACGGAAGGTGGAGTA

Confirmation - LEAP-Seq

LEAP-Seq distance:304
LEAP-Seq percent confirming:22.2222
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:7
LEAP-Seq n unique pos:9

Suggested primers for confirmation by PCR

Suggested primer 1:TCGCTTATCCCCTGACAGGA
Suggested primer 2:GCCAACGCATGAATGGTTGT