Insertion junction: CLIP2.078687_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.078687
Chromosome:chromosome 12
Location:1421277
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g488550 FKM8 DNA methylase in the FkbM family; (1 of 13) PF05050 - Methyltransferase FkbM domain (Methyltransf_21) outside_mRNA
Cre12.g488600 (1 of 1) IPR000104//IPR006059 - Antifreeze protein, type I // Solute-binding family 1 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCGTGGGGAAGTCCGTGTCCATCTCACTGACCATCTCACAGACTAAGCGC
Internal bar code:ACGGTCCGTCAGGTTGTTTAAA

Confirmation - LEAP-Seq

LEAP-Seq distance:367
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:5

Suggested primers for confirmation by PCR

Suggested primer 1:TATTGCCCCTGAAGCTGTGG
Suggested primer 2:GCATTGACCACCTACCACGA