Insertion junction: CLIP2.078729_3

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.078729
Chromosome:chromosome 6
Location:5453299
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g285900 FAP396 (1 of 2) IPR000104//IPR003590 - Antifreeze protein, type I // Leucine-rich repeat, ribonuclease inhibitor subtype; Flagellar Associated Protein 396 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTGAGGCTTTTCTACTTACTTTCAGCCCACGCACACACAGGTGTAGTTGT
Internal bar code:TCTATGGTATGGGTGGGACTTC

Confirmation - LEAP-Seq

LEAP-Seq distance:4161
LEAP-Seq percent confirming:84.6154
LEAP-Seq n confirming:22
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:26

Suggested primers for confirmation by PCR

Suggested primer 1:CCGTATCATGCTTTGCTGGC
Suggested primer 2:ACTGGAGCTGTGCTATGCAG