Insertion junction: CLIP2.078752_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.078752
Chromosome:chromosome 17
Location:5613795
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g739900 (1 of 1) IPR012337//IPR027417 - Ribonuclease H-like domain // P-loop containing nucleoside triphosphate hydrolase 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TACACCTAATCTCCCCCCTACCGACGTTCCTTCCCGGCGCTGCCTCGGTC
Internal bar code:TGGATAGGCGATTAGTATTAT

Confirmation - LEAP-Seq

LEAP-Seq distance:5426
LEAP-Seq percent confirming:86.1538
LEAP-Seq n confirming:56
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:65

Suggested primers for confirmation by PCR

Suggested primer 1:TTCCTCCATCTGCTGCCTTG
Suggested primer 2:ACGTACCGCATCCATCCATC