Insertion junction: CLIP2.078768_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.078768
Chromosome:plastome
Location:171868
Confidence (%):40
Locus systematic id Locus common name Defline Feature
CreCp.g802327 2716959,atpI,ChreCp062 ATPase IV subunit; (1 of 1) K02108 - F-type H+-transporting ATPase subunit a (ATPF0A, atpB) 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGGTATGCTTTGTATTATTGTTAGCCCTAAGGAGGACACGTAAGTAAGGT
Internal bar code:TATTTTATTAGAATCCGATATA

Confirmation - LEAP-Seq

LEAP-Seq distance:167
LEAP-Seq percent confirming:20.0
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:8
LEAP-Seq n unique pos:10

Suggested primers for confirmation by PCR

Suggested primer 1:AGCCCTTAACTGCTTGGCAT
Suggested primer 2:ACGCCGCTGGTTCTACATAG