Insertion junction: CLIP2.078772_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.078772
Chromosome:plastome
Location:195123
Confidence (%):40
Locus systematic id Locus common name Defline Feature
CreCp.g802335 rpoC1,ChreCp069,2717049 (1 of 2) K03046 - DNA-directed RNA polymerase subunit beta' (rpoC); RNA polymerase beta' chain 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCACTTGTGAGTTAACATATATAATCCATGACCAGCTTTTTTTGATCTCT
Internal bar code:TTTTGCATTGTGTTTAAACCCC

Confirmation - LEAP-Seq

LEAP-Seq distance:319
LEAP-Seq percent confirming:72.7273
LEAP-Seq n confirming:8
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:CTCCCATGCTTTGCCCCTTA
Suggested primer 2:AGTTGCTGCTTCGGGAAGAT