Insertion junction: CLIP2.078801_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.078801
Chromosome:chromosome 3
Location:3164097
Confidence (%):40
Locus systematic id Locus common name Defline Feature
Cre03.g164950 SRS3 Serine/arginine-rich pre-mRNA splicing factor; (1 of 5) IPR000504//IPR012677 - RNA recognition motif domain // Nucleotide-binding alpha-beta plait domain 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTAGACTGCTGCTTGCGGGGATATAGAAGGAACACTCGCGGACATTCCAA
Internal bar code:TCGAATGTTGTAGTTGGGCCCT

Confirmation - LEAP-Seq

LEAP-Seq distance:559
LEAP-Seq percent confirming:52.0
LEAP-Seq n confirming:13
LEAP-Seq n nonconfirming:12
LEAP-Seq n unique pos:25

Suggested primers for confirmation by PCR

Suggested primer 1:AGCCTGAGTGGTCGTCAATG
Suggested primer 2:CATAGTCCAGTGCTAGCCCG