Insertion junction: CLIP2.078998_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.078998
Chromosome:chromosome 17
Location:2885416
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre17.g718950 RCA2 (1 of 4) IPR003959//IPR027417 - ATPase, AAA-type, core // P-loop containing nucleoside triphosphate hydrolase; RuBisCO activase-like protein intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCAAGTTACACCCGCCTCGAACTCCGCAACTTCGCGACGCCACTGCATTG
Internal bar code:AAAGCTTCTGTCGACAACAGCG

Confirmation - LEAP-Seq

LEAP-Seq distance:89
LEAP-Seq percent confirming:68.4211
LEAP-Seq n confirming:13
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:19

Suggested primers for confirmation by PCR

Suggested primer 1:GGCTGTCGTCTTCCTGTCAA
Suggested primer 2:ATCCCGCAGCTTACGTACTG