Insertion junction: CLIP2.079096_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.079096
Chromosome:chromosome 16
Location:5018557
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre16.g686100 (1 of 19) PTHR31251//PTHR31251:SF1 - FAMILY NOT NAMED // SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 10-RELATED CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGCGCTGCTGCCGCCGCTGGGCAGGGCGCGCAGCGCCATCAGCCGATGCA
Internal bar code:GTTGATATCGTATTTTCACGTG

Confirmation - LEAP-Seq

LEAP-Seq distance:214
LEAP-Seq percent confirming:55.5556
LEAP-Seq n confirming:10
LEAP-Seq n nonconfirming:8
LEAP-Seq n unique pos:18

Suggested primers for confirmation by PCR

Suggested primer 1:GAGGACTCGTCGTTGTGGAG
Suggested primer 2:GCTGCTGGTACTGTTGTTGC