Insertion junction: CLIP2.079118_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.079118
Chromosome:chromosome 2
Location:3338056
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g097900 AST3 (1 of 1) K00811 - aspartate aminotransferase, chloroplastic (ASP5); Aspartate aminotransferase 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTCCCCTCCCAAGAGCACGTTTCCTCGCCAAGAGGAAGCGTTGTGGGGCG
Internal bar code:CGCGAGTTCACATTATGTCCAA

Confirmation - LEAP-Seq

LEAP-Seq distance:496
LEAP-Seq percent confirming:11.1111
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:16
LEAP-Seq n unique pos:18

Suggested primers for confirmation by PCR

Suggested primer 1:CAGTGGATACTCGACCGCTC
Suggested primer 2:TCCCAGGAAAGGCTATCCCA