Insertion junction: CLIP2.079120_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.079120
Chromosome:chromosome 4
Location:638878
Confidence (%):40
Locus systematic id Locus common name Defline Feature
Cre04.g217945 FAD5D Putative Linoleate desaturase; (1 of 2) K00507 - stearoyl-CoA desaturase (delta-9 desaturase) (SCD, desC) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GAACCCCGACCCCACCGTGTGCTGTTGAGCGCCTCATCGAACAGCCAGCC
Internal bar code:CTTGAGGCTGTCTTGGCTCGTA

Confirmation - LEAP-Seq

LEAP-Seq distance:846
LEAP-Seq percent confirming:63.6364
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:CCTCCTCCAAACTTGCGAGT
Suggested primer 2:CGTCGTCACTCACTCACCAA