Insertion junction: CLIP2.079211_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.079211
Chromosome:chromosome 2
Location:4245772
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g104500 CDJ4 (1 of 2) IPR001080 - 3Fe-4S ferredoxin; Chloroplast DnaJ-like protein 4 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACTGGGGAGCGTTCTGGAGAGCTGTTCCTGCCCCCAACTGCTGTTGATCA
Internal bar code:CCATAGTCGGCGACGGCGTCCC

Confirmation - LEAP-Seq

LEAP-Seq distance:2111
LEAP-Seq percent confirming:40.0
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:10

Suggested primers for confirmation by PCR

Suggested primer 1:TACCTTCCCCGCAACAAGAC
Suggested primer 2:GAGCCACAGCCCCAAGTTAT