Insertion junction: CLIP2.079239_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.079239
Chromosome:chromosome 6
Location:5229141
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g284000 (1 of 1) PTHR16019//PTHR16019:SF5 - SYNAPSE-ASSOCIATED PROTEIN // BSD DOMAIN-CONTAINING PROTEIN 1 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AAGATGTACGCTTCACCAGACCCGGAACGTCCGGTGCGATCCCAGTTCCC
Internal bar code:ACCGCGCTCAGGAGTAAAGCAA

Confirmation - LEAP-Seq

LEAP-Seq distance:167
LEAP-Seq percent confirming:7.69231
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:24
LEAP-Seq n unique pos:26

Suggested primers for confirmation by PCR

Suggested primer 1:TACCCTGTGTTGAGCTGCTG
Suggested primer 2:CGGCCGCATAATTGGTGATG