Insertion junction: CLIP2.079295_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.079295
Chromosome:chromosome 2
Location:8144232
Confidence (%):40
Locus systematic id Locus common name Defline Feature
Cre02.g144002 PUS20 (1 of 2) 5.4.99.24 - 23S rRNA pseudouridine(955/2504/2580) synthase; RNA pseudouridine synthase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGTCCCCAGCCACGCCCCCAGCCGTCCCCCCGGCCGCTCACCGTGACGCC
Internal bar code:CCTTAGTACCCTTTAAATGAAC

Confirmation - LEAP-Seq

LEAP-Seq distance:809
LEAP-Seq percent confirming:77.7778
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:9

Suggested primers for confirmation by PCR

Suggested primer 1:TACACACGCACAGGACCTTC
Suggested primer 2:GCAGCCATCTATCACGACGA