Insertion junction: CLIP2.079296_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.079296
Chromosome:chromosome 1
Location:7023762
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g800128 (1 of 4) PTHR11229:SF5 - 50S RIBOSOMAL PROTEIN L3-1, CHLOROPLASTIC 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTGGTTTCGTGGGGGCGGCAAGGCTGATAGCTGACGGCTGGATGGGGCAT
Internal bar code:TATTGCACATATCGTGGTGGTT

Confirmation - LEAP-Seq

LEAP-Seq distance:954
LEAP-Seq percent confirming:16.6667
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:15
LEAP-Seq n unique pos:18

Suggested primers for confirmation by PCR

Suggested primer 1:CTAGGCCGACTGCTAACGAG
Suggested primer 2:GAGGAAAGTGGGGTAGTGGC