Insertion junction: CLIP2.079322_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.079322
Chromosome:plastome
Location:12042
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802267 ChreCp005,2716979,tufA elongation factor 1-alpha; (1 of 1) PTHR23115//PTHR23115:SF146 - TRANSLATION FACTOR // SUBFAMILY NOT NAMED CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AACGTTATCCATTAATTGGTAAATTTTGTCAACCCATTTGTTTTCACCAC
Internal bar code:GCAGTATAAACTGTGGATGATT

Confirmation - LEAP-Seq

LEAP-Seq distance:566
LEAP-Seq percent confirming:15.625
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:27
LEAP-Seq n unique pos:32

Suggested primers for confirmation by PCR

Suggested primer 1:ATGATCACAGGTGCTGCACA
Suggested primer 2:CCAAAGGGGACGTCCGTTAA