Insertion junction: CLIP2.079324_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.079324
Chromosome:chromosome 6
Location:3641415
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre06.g278141 (1 of 58) PTHR12393//PTHR12393:SF6 - SPHINGOMYELIN PHOSPHODIESTERASE RELATED // SPHINGOMYELIN PHOSPHODIESTERASE 2 3'UTR
Cre06.g278142 (1 of 1) K14441 - ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] (rimO) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TAACATGATCGCCATACGACACCACGGATTAGCATGCCCCAGTGCTCCCG
Internal bar code:CACCGATTCCGGATCTGTGGCC

Confirmation - LEAP-Seq

LEAP-Seq distance:287
LEAP-Seq percent confirming:50.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:2

Suggested primers for confirmation by PCR

Suggested primer 1:TCTGGATCTGGAGCGGTACA
Suggested primer 2:CTCGCTGTTTGACCTGGAGT