Insertion junction: CLIP2.079391_3

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.079391
Chromosome:chromosome 9
Location:4915254
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g403182 SPT6 (1 of 1) K11292 - transcription elongation factor SPT6 (SUPT6H, SPT6) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGGGCATCTGCATCTTCGGGCAGCGGCAAGAAGCGGGTGTGTTTTCACGC
Internal bar code:AGGTACTGGTGAGGCTTGCTGG

Confirmation - LEAP-Seq

LEAP-Seq distance:879
LEAP-Seq percent confirming:7.40741
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:25
LEAP-Seq n unique pos:27

Suggested primers for confirmation by PCR

Suggested primer 1:CCTGACATGCCTTGTGGGAT
Suggested primer 2:AATAGCTACGAGCCTGCGAC