Insertion junction: CLIP2.079408_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.079408
Chromosome:chromosome 7
Location:2986337
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g333400 MMP23 Matrix metalloproteinase; (1 of 4) IPR003882//IPR008752 - Pistil-specific extensin-like protein // Peptidase M11, gametolysin 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCTACAGTATTGCTGCATGGATAACAAGGACATAATCGCCGTTGGCAGAC
Internal bar code:TTATGTTGCTCCAATGGCGGAG

Confirmation - LEAP-Seq

LEAP-Seq distance:2901
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:87
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:87

Suggested primers for confirmation by PCR

Suggested primer 1:GACTTCTCCGTCCGGCATAG
Suggested primer 2:GTCAGCGTCTGAGCCAGAAT