Insertion junction: CLIP2.079440_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.079440
Chromosome:chromosome 10
Location:363195
Confidence (%):40
Locus systematic id Locus common name Defline Feature
Cre10.g420450 (1 of 2) PTHR18841:SF0 - PROTEIN C08G5.3, ISOFORM A-RELATED CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GAAAAGACGTCCTGTTGGGTTGCAGGGCAAGACGCGGTCGGGTCAGGCAG
Internal bar code:TTTTAAACAACTACTCGGGTCT

Confirmation - LEAP-Seq

LEAP-Seq distance:160
LEAP-Seq percent confirming:46.1538
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:7
LEAP-Seq n unique pos:13

Suggested primers for confirmation by PCR

Suggested primer 1:AGCTCAACCTGTCATCACCG
Suggested primer 2:TCCACGATCTTCCACTTGCC