Insertion junction: LMJ.RY0402.045960_1

Overview

Insertion cassette:CIB1
Side of cassette:3'
Strand:+
Strain:LMJ.RY0402.045960
Chromosome:chromosome 3
Location:5374043
Confidence (%):73
Locus systematic id Locus common name Defline Feature
Cre03.g184500 (1 of 2) PTHR33925:SF3 - PROTEIN ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, CHLOROPLASTIC 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCTTAAGTGCCGGGTCCAATCCTACTGTGG
Internal bar code:AAGCGGTGTCTCTGTGCGATGG

Confirmation - LEAP-Seq

LEAP-Seq distance:831
LEAP-Seq percent confirming:99.0459
LEAP-Seq n confirming:1661
LEAP-Seq n nonconfirming:16
LEAP-Seq n unique pos:14

Suggested primers for confirmation by PCR

Suggested primer 1:CATAAGGACGTGGCGTAGGT
Suggested primer 2:GACTGGTCTGAAGCGTGTGA