Insertion junction: LMJ.RY0402.046533_1

Overview

Insertion cassette:CIB1
Side of cassette:3'
Strand:+
Strain:LMJ.RY0402.046533
Chromosome:chromosome 3
Location:7689508
Confidence (%):73
Locus systematic id Locus common name Defline Feature
Cre03.g203730 DEGO1,DEG12 Inactive Deg protease; (1 of 4) PTHR22939//PTHR22939:SF83 - SERINE PROTEASE FAMILY S1C HTRA-RELATED // PROTEASE DO-LIKE 2, CHLOROPLASTIC intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGTAATCCGTCGCCGTACGCCGCCTTGTG
Internal bar code:CCCTACTAAAACGAGCGACATG

Confirmation - LEAP-Seq

LEAP-Seq distance:434
LEAP-Seq percent confirming:92.1927
LEAP-Seq n confirming:555
LEAP-Seq n nonconfirming:47
LEAP-Seq n unique pos:3

Suggested primers for confirmation by PCR

Suggested primer 1:CCCCGTTTGCCTTGTAGTTA
Suggested primer 2:GCAGTAGGTTCTCCTCGTCG