Insertion junction: LMJ.RY0402.049653_1

Overview

Insertion cassette:CIB1
Side of cassette:3'
Strand:-
Strain:LMJ.RY0402.049653
Chromosome:chromosome 4
Location:2069791
Confidence (%):95
Locus systematic id Locus common name Defline Feature
Cre04.g219150 (1 of 14) IPR006626//IPR011050 - Parallel beta-helix repeat // Pectin lyase fold/virulence factor CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCCCGGCGTGTAAACCGCGCCGCCACCCGC
Internal bar code:GTCAGATCTGTCGCTGGTGAAC

Confirmation - LEAP-Seq

LEAP-Seq distance:644
LEAP-Seq percent confirming:85.4496
LEAP-Seq n confirming:3136
LEAP-Seq n nonconfirming:534
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:ACAAACTGCACGAACAGCAC
Suggested primer 2:ACAGCACGTTCATCAGCAAC