Insertion junction: LMJ.RY0402.049653_2

Overview

Insertion cassette:CIB1
Side of cassette:5'
Strand:-
Strain:LMJ.RY0402.049653
Chromosome:chromosome 4
Location:2070350
Confidence (%):95
Locus systematic id Locus common name Defline Feature
Cre04.g219150 (1 of 14) IPR006626//IPR011050 - Parallel beta-helix repeat // Pectin lyase fold/virulence factor CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGTTCGTGCAGTTTGTGGGGAACAGGGACC
Internal bar code:GCACATCTCTCCGTATATACT

Confirmation - LEAP-Seq

LEAP-Seq distance:0
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:1

Suggested primers for confirmation by PCR

Suggested primer 1:CATTGTCGGCAATTATGGTG
Suggested primer 2:GTCTCGGACGCAGTCTTTTC