Insertion junction: LMJ.RY0402.051990_2

Overview

Insertion cassette:CIB1
Side of cassette:5'
Strand:-
Strain:LMJ.RY0402.051990
Chromosome:chromosome 17
Location:5906543
Confidence (%):95
Locus systematic id Locus common name Defline Feature
Cre17.g740050 (1 of 2) IPR003582//IPR011050//IPR019316 - ShKT domain // Pectin lyase fold/virulence factor // G8 domain intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTTGATTGACTTAGTGGGTGGTGGTTGGAT
Internal bar code:TAATACACTATACTCCCCTTTC

Confirmation - LEAP-Seq

LEAP-Seq distance:560
LEAP-Seq percent confirming:99.4754
LEAP-Seq n confirming:13085
LEAP-Seq n nonconfirming:69
LEAP-Seq n unique pos:7

Suggested primers for confirmation by PCR

Suggested primer 1:CATGTCACGCTGAGAGGAAA
Suggested primer 2:CCCACCTCAAACTCCCAGTA