Insertion junction: LMJ.RY0402.079203_1

Overview

Insertion cassette:CIB1
Side of cassette:3'
Strand:-
Strain:LMJ.RY0402.079203
Chromosome:chromosome 17
Location:3929620
Confidence (%):95
Locus systematic id Locus common name Defline Feature
Cre17.g728450 (1 of 1) IPR006626//IPR010308//IPR011050 - Parallel beta-helix repeat // TRP-like family // Pectin lyase fold/virulence factor intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GAGAGTACCGTAGGCTGCTGTCTAGCTGGG
Internal bar code:GAGGAATGACGGTAGTAGGGGA

Confirmation - LEAP-Seq

LEAP-Seq distance:516
LEAP-Seq percent confirming:98.5866
LEAP-Seq n confirming:279
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:15

Suggested primers for confirmation by PCR

Suggested primer 1:GGGCCTAATGGAGGATTCAT
Suggested primer 2:CAACCTGCATGTTTGGTTTG