Insertion junction: LMJ.RY0402.082341_2

Overview

Insertion cassette:CIB1
Side of cassette:3'
Strand:+
Strain:LMJ.RY0402.082341
Chromosome:chromosome 4
Location:2400396
Confidence (%):58
Locus systematic id Locus common name Defline Feature
Cre04.g221200 CGL109 Conserved in the Green Lineage; (1 of 1) IPR001005//IPR001965//IPR009057//IPR011011//IPR013083//IPR017877 - SANT/Myb domain // Zinc finger, PHD-type // Homeodomain-like // Zinc finger, FYVE/PHD-type // Zinc finger, RING/FYVE/PHD-type // Myb-like domain intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCCGCCTGCCCTCCCCTACGGTGTTCCAG
Internal bar code:AACCGAGGCAAGAGAAACATTA

Confirmation - LEAP-Seq

LEAP-Seq distance:141
LEAP-Seq percent confirming:98.4848
LEAP-Seq n confirming:910
LEAP-Seq n nonconfirming:14
LEAP-Seq n unique pos:10

Suggested primers for confirmation by PCR

Suggested primer 1:GCCCAGCCTACACAACTAGC
Suggested primer 2:CTGGGAGCCTTCAGAGATTG