Insertion junction: LMJ.RY0402.086376_1

Overview

Insertion cassette:CIB1
Side of cassette:3'
Strand:+
Strain:LMJ.RY0402.086376
Chromosome:chromosome 17
Location:2490811
Confidence (%):58
Locus systematic id Locus common name Defline Feature
Cre17.g716050 (1 of 1) PTHR20953:SF2 - PROTEIN SEEDLING PLASTID DEVELOPMENT 1 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCCCCATTGCAGCCCACCTGGGTTTGGTTT
Internal bar code:CGCCCAGACTTGTTATGAGTGC

Confirmation - LEAP-Seq

LEAP-Seq distance:235
LEAP-Seq percent confirming:43.8849
LEAP-Seq n confirming:61
LEAP-Seq n nonconfirming:78
LEAP-Seq n unique pos:6

Suggested primers for confirmation by PCR

Suggested primer 1:ACATGTAGCACTCCGTTCCC
Suggested primer 2:TCACCACCAGAAATTGTCCA