Insertion junction: LMJ.RY0402.086588_1

Overview

Insertion cassette:CIB1
Side of cassette:3'
Strand:-
Strain:LMJ.RY0402.086588
Chromosome:chromosome 16
Location:734382
Confidence (%):73
Locus systematic id Locus common name Defline Feature
Cre16.g691050 (1 of 1) PF08381 - Transcription factor regulating root and shoot growth via Pin3 (BRX) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTATTTGCAAATGCTCATGGACTGTGTCGC
Internal bar code:TCAGGCTCGGAATGGTAGTGCA

Confirmation - LEAP-Seq

LEAP-Seq distance:501
LEAP-Seq percent confirming:96.6119
LEAP-Seq n confirming:1939
LEAP-Seq n nonconfirming:68
LEAP-Seq n unique pos:9

Suggested primers for confirmation by PCR

Suggested primer 1:ACTGTACGTCAGCATGTCGC
Suggested primer 2:GCCCTTACGTGGTAGCTGTC