Insertion junction: LMJ.RY0402.091536_1

Overview

Insertion cassette:CIB1
Side of cassette:3'
Strand:+
Strain:LMJ.RY0402.091536
Chromosome:chromosome 17
Location:4614941
Confidence (%):58
Locus systematic id Locus common name Defline Feature
Cre17.g733100 (1 of 1) IPR000104//IPR003882 - Antifreeze protein, type I // Pistil-specific extensin-like protein 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCTAAACGCACGCGACCAGGGTGTCAGCAA
Internal bar code:CGGTGTCGGCGTCTCGCGAGTG

Confirmation - LEAP-Seq

LEAP-Seq distance:274
LEAP-Seq percent confirming:70.0562
LEAP-Seq n confirming:2990
LEAP-Seq n nonconfirming:1278
LEAP-Seq n unique pos:19

Suggested primers for confirmation by PCR

Suggested primer 1:TGATTCAGGAGGGGTATTGC
Suggested primer 2:GCTGAAGTAAGGCTCCGATG