Insertion junction: LMJ.RY0402.091892_1

Overview

Insertion cassette:CIB1
Side of cassette:3'
Strand:+
Strain:LMJ.RY0402.091892
Chromosome:chromosome 4
Location:2084412
Confidence (%):73
Locus systematic id Locus common name Defline Feature
Cre04.g219150 (1 of 14) IPR006626//IPR011050 - Parallel beta-helix repeat // Pectin lyase fold/virulence factor CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTGCTCAGCCTCACCGTCACGCTGGGGTGA
Internal bar code:GCCGGATGCGCGTAGCGAAACG

Confirmation - LEAP-Seq

LEAP-Seq distance:131
LEAP-Seq percent confirming:85.3524
LEAP-Seq n confirming:775
LEAP-Seq n nonconfirming:133
LEAP-Seq n unique pos:10

Suggested primers for confirmation by PCR

Suggested primer 1:AGGTTGTCGGATTATGCCTG
Suggested primer 2:GCGTTTACGACCAGGATGAT