Insertion junction: LMJ.RY0402.093194_1

Overview

Insertion cassette:CIB1
Side of cassette:5'
Strand:-
Strain:LMJ.RY0402.093194
Chromosome:chromosome 13
Location:455711
Confidence (%):58
Locus systematic id Locus common name Defline Feature
Cre13.g564850 (1 of 1) PTHR31651:SF3 - AUXIN EFFLUX CARRIER FAMILY PROTEIN intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCGCCCCTTCCCTCCCGCGTCTTTCATTTG
Internal bar code:CCTCTTCCACGGCGATCCAAGC

Confirmation - LEAP-Seq

LEAP-Seq distance:20
LEAP-Seq percent confirming:88.8889
LEAP-Seq n confirming:72
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:5

Suggested primers for confirmation by PCR

Suggested primer 1:CTGTCTCTGCTGGTGATGCT
Suggested primer 2:ATACTGGCATGTCGTAGCCC