Insertion junction: LMJ.RY0402.097546_1

Overview

Insertion cassette:CIB1
Side of cassette:3'
Strand:-
Strain:LMJ.RY0402.097546
Chromosome:chromosome 10
Location:2331505
Confidence (%):73
Locus systematic id Locus common name Defline Feature
Cre10.g434850 (1 of 14) IPR006626//IPR011050 - Parallel beta-helix repeat // Pectin lyase fold/virulence factor intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTGTCGCAATAATGCTGTCTTTGCGTTACC
Internal bar code:ACGGGGGACGAGTAGGGAAGCA

Confirmation - LEAP-Seq

LEAP-Seq distance:290
LEAP-Seq percent confirming:93.2186
LEAP-Seq n confirming:921
LEAP-Seq n nonconfirming:67
LEAP-Seq n unique pos:6

Suggested primers for confirmation by PCR

Suggested primer 1:GGGGAGGAGGGGTGTAAATA
Suggested primer 2:GCACGTGCTCTCATCAAAAA