Insertion junction: LMJ.RY0402.108444_1

Overview

Insertion cassette:CIB1
Side of cassette:3'
Strand:-
Strain:LMJ.RY0402.108444
Chromosome:chromosome 4
Location:2069072
Confidence (%):73
Locus systematic id Locus common name Defline Feature
Cre04.g219150 (1 of 14) IPR006626//IPR011050 - Parallel beta-helix repeat // Pectin lyase fold/virulence factor intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATCAGGCGAGCAAGGGGCCCGCACGACGCA
Internal bar code:AACCCCGGTTTGCGATGGGCGA

Confirmation - LEAP-Seq

LEAP-Seq distance:663
LEAP-Seq percent confirming:99.7339
LEAP-Seq n confirming:1499
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:9

Suggested primers for confirmation by PCR

Suggested primer 1:AAGACTGCGTCCGAGACACT
Suggested primer 2:ACCAACGTGACCTTGACACA