Insertion junction: LMJ.RY0402.108444_2

Overview

Insertion cassette:CIB1
Side of cassette:5'
Strand:+
Strain:LMJ.RY0402.108444
Chromosome:chromosome 4
Location:2069944
Confidence (%):58
Locus systematic id Locus common name Defline Feature
Cre04.g219150 (1 of 14) IPR006626//IPR011050 - Parallel beta-helix repeat // Pectin lyase fold/virulence factor CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGCGATGTCCACGCGCTCAACTCCCGGCGT
Internal bar code:AAGCCGCGTGCAATGTTTAACA

Confirmation - LEAP-Seq

LEAP-Seq distance:495
LEAP-Seq percent confirming:99.7613
LEAP-Seq n confirming:836
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:3

Suggested primers for confirmation by PCR

Suggested primer 1:ACAGCACGTTCATCAGCAAC
Suggested primer 2:ACAAACTGCACGAACAGCAC