Insertion junction: LMJ.RY0402.109776_1

Overview

Insertion cassette:CIB1
Side of cassette:3'
Strand:+
Strain:LMJ.RY0402.109776
Chromosome:chromosome 4
Location:2073050
Confidence (%):95
Locus systematic id Locus common name Defline Feature
Cre04.g219150 (1 of 14) IPR006626//IPR011050 - Parallel beta-helix repeat // Pectin lyase fold/virulence factor CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGGATTGCAACGTGACCGTCACGACCAGCG
Internal bar code:GGATTGCATACGTCGGGTTGTC

Confirmation - LEAP-Seq

LEAP-Seq distance:642
LEAP-Seq percent confirming:95.811
LEAP-Seq n confirming:4643
LEAP-Seq n nonconfirming:203
LEAP-Seq n unique pos:15

Suggested primers for confirmation by PCR

Suggested primer 1:AGTCAGCCCGACCTACCTTT
Suggested primer 2:GCTGGATGGCTGTTGAGAAT