Insertion junction: LMJ.RY0402.111481_1

Overview

Insertion cassette:CIB1
Side of cassette:3'
Strand:+
Strain:LMJ.RY0402.111481
Chromosome:chromosome 4
Location:2077247
Confidence (%):73
Locus systematic id Locus common name Defline Feature
Cre04.g219150 (1 of 14) IPR006626//IPR011050 - Parallel beta-helix repeat // Pectin lyase fold/virulence factor intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTGGCTACAAGTCCACTTCGCCGCTTATCA
Internal bar code:TGCGCGCAGAAAGGCCATAGGC

Confirmation - LEAP-Seq

LEAP-Seq distance:628
LEAP-Seq percent confirming:91.4255
LEAP-Seq n confirming:2591
LEAP-Seq n nonconfirming:243
LEAP-Seq n unique pos:23

Suggested primers for confirmation by PCR

Suggested primer 1:GTGTGGTCGTTGCTGCTATG
Suggested primer 2:GGCTCCGTTCTCAATGGTAA