Insertion junction: LMJ.RY0402.112532_1

Overview

Insertion cassette:CIB1
Side of cassette:3'
Strand:-
Strain:LMJ.RY0402.112532
Chromosome:chromosome 4
Location:1250885
Confidence (%):73
Locus systematic id Locus common name Defline Feature
Cre04.g215150 SSS1B,SSS1,SSIb (1 of 1) IPR023159 - SO1590-like domain; Soluble starch synthase IB intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CACACACAGTGCCCGCTGGCCCTGCCCTAA
Internal bar code:TATGAGGAACTCAACGTGGGC

Confirmation - LEAP-Seq

LEAP-Seq distance:282
LEAP-Seq percent confirming:98.5185
LEAP-Seq n confirming:266
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:2

Suggested primers for confirmation by PCR

Suggested primer 1:CACCTTCCCACCTCTTACCA
Suggested primer 2:ATGCAGTGGTCAGGTTAGGG