Insertion junction: LMJ.RY0402.112579_2

Overview

Insertion cassette:CIB1
Side of cassette:5'
Strand:-
Strain:LMJ.RY0402.112579
Chromosome:chromosome 1
Location:3995248
Confidence (%):95
Locus systematic id Locus common name Defline Feature
Cre01.g025950 PPR8 (1 of 1) IPR000209//IPR002885 - Peptidase S8/S53 domain // Pentatricopeptide repeat; PentatricoPeptide Repeat protein 8 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCGGAGCTGTCGTCAGTCTTCAAGGGCTGC
Internal bar code:TACGACGACGACCTTTGCTTAT

Confirmation - LEAP-Seq

LEAP-Seq distance:209
LEAP-Seq percent confirming:99.4966
LEAP-Seq n confirming:2174
LEAP-Seq n nonconfirming:11
LEAP-Seq n unique pos:5

Suggested primers for confirmation by PCR

Suggested primer 1:CCCATTTCCTTAGCTCACCA
Suggested primer 2:AGCACAAGGACAAATACGGG