Insertion junction: LMJ.RY0402.115985_2

Overview

Insertion cassette:CIB1
Side of cassette:5'
Strand:-
Strain:LMJ.RY0402.115985
Chromosome:chromosome 1
Location:4725855
Confidence (%):95
Locus systematic id Locus common name Defline Feature
Cre01.g032550 CGL127 (1 of 1) K11267 - sister chromatid cohesion protein PDS5 (PDS5); Conserved in the Green Lineage intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCACACACCGAAACTGACAGTTTCCATTCC
Internal bar code:TACGATATTTCGGTGAACAGGC

Confirmation - LEAP-Seq

LEAP-Seq distance:171
LEAP-Seq percent confirming:99.8978
LEAP-Seq n confirming:977
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:2

Suggested primers for confirmation by PCR

Suggested primer 1:AGGGAAAGGACAACATCGTG
Suggested primer 2:TCCGACTCCTCTATCATGCC