Insertion junction: LMJ.RY0402.125781_2

Overview

Insertion cassette:CIB1
Side of cassette:5'
Strand:-
Strain:LMJ.RY0402.125781
Chromosome:chromosome 3
Location:5378727
Confidence (%):95
Locus systematic id Locus common name Defline Feature
Cre03.g184500 (1 of 2) PTHR33925:SF3 - PROTEIN ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, CHLOROPLASTIC 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TACAAAGCAGCACACCGCATTTCCTATCTG
Internal bar code:CGATCCCTGGATGTCAAGCTCG

Confirmation - LEAP-Seq

LEAP-Seq distance:108
LEAP-Seq percent confirming:93.3333
LEAP-Seq n confirming:14
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:1

Suggested primers for confirmation by PCR

Suggested primer 1:TGCAGTACCAGTTCCTGTGC
Suggested primer 2:AGCTCGCTGTCCTTGAATGT