Insertion junction: LMJ.RY0402.133052_3

Overview

Insertion cassette:CIB1
Side of cassette:5'
Strand:-
Strain:LMJ.RY0402.133052
Chromosome:chromosome 13
Location:4617849
Confidence (%):95
Locus systematic id Locus common name Defline Feature
Cre13.g604050 (1 of 1) IPR002048//IPR006626//IPR011050 - EF-hand domain // Parallel beta-helix repeat // Pectin lyase fold/virulence factor intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGAGGGAGAGGGGTCGCTTCTCAGCCTTCG
Internal bar code:TCTGTCTTGACACTCTTGATAT

Confirmation - LEAP-Seq

LEAP-Seq distance:252
LEAP-Seq percent confirming:30.5708
LEAP-Seq n confirming:391
LEAP-Seq n nonconfirming:888
LEAP-Seq n unique pos:2

Suggested primers for confirmation by PCR

Suggested primer 1:GTTGGGTAGGGTTGGGTCTT
Suggested primer 2:GTATTGCAGCAGGGTTTGGT