Insertion junction: LMJ.RY0402.134247_1

Overview

Insertion cassette:CIB1
Side of cassette:5'
Strand:+
Strain:LMJ.RY0402.134247
Chromosome:chromosome 6
Location:2620387
Confidence (%):73
Locus systematic id Locus common name Defline Feature
Cre06.g269752 TRXm,TRXM1,TRX15 (1 of 1) IPR000104//IPR005746//IPR012336//IPR013766 - Antifreeze protein, type I // Thioredoxin // Thioredoxin-like fold // Thioredoxin domain; Thioredoxin m, chloroplastic intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AACCCTAGCAAGCGCCTGCACCAAACCCTA
Internal bar code:GGCTCTCTGCCTTTGGGCCCCC

Confirmation - LEAP-Seq

LEAP-Seq distance:677
LEAP-Seq percent confirming:99.5074
LEAP-Seq n confirming:404
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:4

Suggested primers for confirmation by PCR

Suggested primer 1:AAACAAGGGAAGGGAGAGGA
Suggested primer 2:TGTTGGTAGCTGAGGCACTG