Insertion junction: LMJ.RY0402.149234_1

Overview

Insertion cassette:CIB1
Side of cassette:3'
Strand:-
Strain:LMJ.RY0402.149234
Chromosome:chromosome 5
Location:1922188
Confidence (%):73
Locus systematic id Locus common name Defline Feature
Cre05.g241633 (1 of 2) IPR006626//IPR011050//IPR012334 - Parallel beta-helix repeat // Pectin lyase fold/virulence factor // Pectin lyase fold intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTGGAGTTCCGCCATTCCCGCCCCGCCCCC
Internal bar code:CCGAGCGGGGTGGCGTAATCCG

Confirmation - LEAP-Seq

LEAP-Seq distance:159
LEAP-Seq percent confirming:98.75
LEAP-Seq n confirming:79
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:4

Suggested primers for confirmation by PCR

Suggested primer 1:GAAGTAGGCAGCAGGCGTAG
Suggested primer 2:GTAGCAGGCGCGTTCTTATC