Insertion junction: LMJ.RY0402.154775_1

Overview

Insertion cassette:CIB1
Side of cassette:3'
Strand:+
Strain:LMJ.RY0402.154775
Chromosome:chromosome 10
Location:3257694
Confidence (%):73
Locus systematic id Locus common name Defline Feature
Cre10.g443100 (1 of 1) IPR001214//IPR023220 - SET domain // Type IV secretion system, VirB5-domain 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATTTACTGACGCCACTCCACCATCGCCTTG
Internal bar code:GCAGTCGCCAGTGAACGTACTA

Confirmation - LEAP-Seq

LEAP-Seq distance:998
LEAP-Seq percent confirming:99.6628
LEAP-Seq n confirming:1478
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:8

Suggested primers for confirmation by PCR

Suggested primer 1:GCGTGTGCTTCTGATCATGT
Suggested primer 2:AGTCTGGCAGCAGGTGATTT